File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/67406d52253f0a04b58c89953874ac/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-st1jti43 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:08:27,982 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:08:29,077 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:08:29,281 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:08:48,946 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:08:49,240 - cnv_pipe.batch.run_model - INFO - Processing cluster 721 with 196 probes
2026-06-03 05:08:49,720 - cnv_pipe.batch.run_model.cluster721 - INFO - Child process started for cluster 721 with 196 probes
2026-06-03 05:12:15,631 - cnv_pipe.batch.run_model.cluster721 - INFO - Child process finished cluster 721. Wrote cluster_721_samples.csv and cluster_721_params.csv
2026-06-03 05:12:15,634 - cnv_pipe.batch.run_model - INFO - Cluster 721 finished in 206.39 seconds. Status: SUCCESS