File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/1b6598faef4c1a6a6b53c4618d966b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-telrbku0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:10:33,353 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:10:34,296 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:10:34,493 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:10:52,485 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:10:52,777 - cnv_pipe.batch.run_model - INFO - Processing cluster 1281 with 176 probes
2026-06-03 05:10:53,253 - cnv_pipe.batch.run_model.cluster1281 - INFO - Child process started for cluster 1281 with 176 probes
2026-06-03 05:13:49,358 - cnv_pipe.batch.run_model.cluster1281 - INFO - Child process finished cluster 1281. Wrote cluster_1281_samples.csv and cluster_1281_params.csv
2026-06-03 05:13:49,361 - cnv_pipe.batch.run_model - INFO - Cluster 1281 finished in 176.58 seconds. Status: SUCCESS