File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/8c42ec35735962c191dd1cb8acf62b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m_p_cl8f because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:08:45,283 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:08:46,448 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:08:46,664 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:09:05,284 - cnv_pipe.batch.run_model - INFO - Loaded data with 68 samples
2026-06-03 05:09:05,527 - cnv_pipe.batch.run_model - INFO - Processing cluster 799 with 125 probes
2026-06-03 05:09:05,994 - cnv_pipe.batch.run_model.cluster799 - INFO - Child process started for cluster 799 with 125 probes
2026-06-03 05:11:14,436 - cnv_pipe.batch.run_model.cluster799 - INFO - Child process finished cluster 799. Wrote cluster_799_samples.csv and cluster_799_params.csv
2026-06-03 05:11:14,438 - cnv_pipe.batch.run_model - INFO - Cluster 799 finished in 128.91 seconds. Status: SUCCESS