File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/b19bd84b036446a26c3a8234899070/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-jete3apl because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:13:22,392 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:13:23,605 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:13:23,878 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:47,286 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:47,559 - cnv_pipe.batch.run_model - INFO - Processing cluster 602 with 186 probes
2026-06-03 05:13:48,185 - cnv_pipe.batch.run_model.cluster602 - INFO - Child process started for cluster 602 with 186 probes
2026-06-03 05:18:10,458 - cnv_pipe.batch.run_model.cluster602 - INFO - Child process finished cluster 602. Wrote cluster_602_samples.csv and cluster_602_params.csv
2026-06-03 05:18:10,461 - cnv_pipe.batch.run_model - INFO - Cluster 602 finished in 262.90 seconds. Status: SUCCESS