File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/ef69c79f3588d537c887bbd75a77e7/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-id7tk1n7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:13:37,232 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:13:38,040 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:13:38,209 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:54,411 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:54,494 - cnv_pipe.batch.run_model - INFO - Processing cluster 738 with 167 probes
2026-06-03 05:13:54,883 - cnv_pipe.batch.run_model.cluster738 - INFO - Child process started for cluster 738 with 167 probes
2026-06-03 05:16:45,888 - cnv_pipe.batch.run_model.cluster738 - INFO - Child process finished cluster 738. Wrote cluster_738_samples.csv and cluster_738_params.csv
2026-06-03 05:16:45,891 - cnv_pipe.batch.run_model - INFO - Cluster 738 finished in 171.40 seconds. Status: SUCCESS