File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/6a51614dfe7f051411e07bf6dc2dd1/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-la0aa4o1 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:13:42,516 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:13:43,359 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:13:43,531 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:58,555 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:58,632 - cnv_pipe.batch.run_model - INFO - Processing cluster 773 with 154 probes
2026-06-03 05:13:59,004 - cnv_pipe.batch.run_model.cluster773 - INFO - Child process started for cluster 773 with 154 probes
2026-06-03 05:16:46,238 - cnv_pipe.batch.run_model.cluster773 - INFO - Child process finished cluster 773. Wrote cluster_773_samples.csv and cluster_773_params.csv
2026-06-03 05:16:46,240 - cnv_pipe.batch.run_model - INFO - Cluster 773 finished in 167.61 seconds. Status: SUCCESS