File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/47a42fa446e2f263a938611d2ea306/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8o61nei3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:15:08,432 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:15:09,257 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:15:09,437 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:15:24,687 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:15:24,893 - cnv_pipe.batch.run_model - INFO - Processing cluster 1338 with 194 probes
2026-06-03 05:15:25,297 - cnv_pipe.batch.run_model.cluster1338 - INFO - Child process started for cluster 1338 with 194 probes
2026-06-03 05:18:30,921 - cnv_pipe.batch.run_model.cluster1338 - INFO - Child process finished cluster 1338. Wrote cluster_1338_samples.csv and cluster_1338_params.csv
2026-06-03 05:18:30,925 - cnv_pipe.batch.run_model - INFO - Cluster 1338 finished in 186.03 seconds. Status: SUCCESS