File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/ce5cd1cf27091a2b17d305e9d00c89/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-a4ozr6f4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:13:10,606 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:13:11,462 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:13:11,640 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:27,405 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:27,490 - cnv_pipe.batch.run_model - INFO - Processing cluster 574 with 127 probes
2026-06-03 05:13:28,024 - cnv_pipe.batch.run_model.cluster574 - INFO - Child process started for cluster 574 with 127 probes
2026-06-03 05:15:42,031 - cnv_pipe.batch.run_model.cluster574 - INFO - Child process finished cluster 574. Wrote cluster_574_samples.csv and cluster_574_params.csv
2026-06-03 05:15:42,033 - cnv_pipe.batch.run_model - INFO - Cluster 574 finished in 134.54 seconds. Status: SUCCESS