mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mfrt56h1 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:13:06,794 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:13:07,574 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:13:07,743 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:23,122 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:23,302 - cnv_pipe.batch.run_model - INFO - Processing cluster 562 with 190 probes
2026-06-03 05:13:23,671 - cnv_pipe.batch.run_model.cluster562 - INFO - Child process started for cluster 562 with 190 probes
2026-06-03 05:16:22,130 - cnv_pipe.batch.run_model.cluster562 - INFO - Child process finished cluster 562. Wrote cluster_562_samples.csv and cluster_562_params.csv
2026-06-03 05:16:22,132 - cnv_pipe.batch.run_model - INFO - Cluster 562 finished in 178.83 seconds. Status: SUCCESS