File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/1a7e0e0dd9d1acbaacf169e766e296/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-j3btjlai because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:14:14,106 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:14:15,147 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:14:15,352 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:14:34,955 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:14:35,065 - cnv_pipe.batch.run_model - INFO - Processing cluster 977 with 181 probes
2026-06-03 05:14:35,735 - cnv_pipe.batch.run_model.cluster977 - INFO - Child process started for cluster 977 with 181 probes
2026-06-03 05:17:30,192 - cnv_pipe.batch.run_model.cluster977 - INFO - Child process finished cluster 977. Wrote cluster_977_samples.csv and cluster_977_params.csv
2026-06-03 05:17:30,194 - cnv_pipe.batch.run_model - INFO - Cluster 977 finished in 175.13 seconds. Status: SUCCESS