Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/201e02d515ce74918c8bbb8d6a7fc4/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/201e02d515ce74918c8bbb8d6a7fc4/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/bff97a725822f58539da83397845a4/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/201e02d515ce74918c8bbb8d6a7fc4/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/bcace19abe1cdd2aaefc013e7c9bb6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/bcace19abe1cdd2aaefc013e7c9bb6/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bi8luv0n because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:14:32,886 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:14:33,693 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:14:33,866 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:14:48,817 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:14:49,020 - cnv_pipe.batch.run_model - INFO - Processing cluster 1145 with 167 probes
2026-06-03 05:14:49,397 - cnv_pipe.batch.run_model.cluster1145 - INFO - Child process started for cluster 1145 with 167 probes
2026-06-03 05:17:38,846 - cnv_pipe.batch.run_model.cluster1145 - INFO - Child process finished cluster 1145. Wrote cluster_1145_samples.csv and cluster_1145_params.csv
2026-06-03 05:17:38,848 - cnv_pipe.batch.run_model - INFO - Cluster 1145 finished in 169.83 seconds. Status: SUCCESS