File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/949e5c8c57d9f0029fae91f9a4572d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-35db1akt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:12:48,769 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:12:49,565 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:12:49,741 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:13:04,898 - cnv_pipe.batch.run_model - INFO - Loaded data with 71 samples
2026-06-03 05:13:04,979 - cnv_pipe.batch.run_model - INFO - Processing cluster 471 with 177 probes
2026-06-03 05:13:05,498 - cnv_pipe.batch.run_model.cluster471 - INFO - Child process started for cluster 471 with 177 probes
2026-06-03 05:16:06,003 - cnv_pipe.batch.run_model.cluster471 - INFO - Child process finished cluster 471. Wrote cluster_471_samples.csv and cluster_471_params.csv
2026-06-03 05:16:06,005 - cnv_pipe.batch.run_model - INFO - Cluster 471 finished in 181.03 seconds. Status: SUCCESS