File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/b0656de47418448f396db9b6df8979/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-w0vlsad9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:10:38,386 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:10:39,296 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:10:39,483 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:11:24,765 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:11:24,985 - cnv_pipe.batch.run_model - INFO - Processing cluster 894 with 192 probes
2026-06-03 06:11:25,390 - cnv_pipe.batch.run_model.cluster894 - INFO - Child process started for cluster 894 with 192 probes
2026-06-03 06:16:43,640 - cnv_pipe.batch.run_model.cluster894 - INFO - Child process finished cluster 894. Wrote cluster_894_samples.csv and cluster_894_params.csv
2026-06-03 06:16:43,643 - cnv_pipe.batch.run_model - INFO - Cluster 894 finished in 318.66 seconds. Status: SUCCESS