File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/f33f74375a0fb1fd52a892b294821b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9agxhpn4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:10:34,503 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:10:35,389 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:10:35,568 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:11:21,953 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:11:22,189 - cnv_pipe.batch.run_model - INFO - Processing cluster 885 with 186 probes
2026-06-03 06:11:22,588 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process started for cluster 885 with 186 probes
2026-06-03 06:16:20,115 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process finished cluster 885. Wrote cluster_885_samples.csv and cluster_885_params.csv
2026-06-03 06:16:20,117 - cnv_pipe.batch.run_model - INFO - Cluster 885 finished in 297.93 seconds. Status: SUCCESS