File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/bd5ddcf981729158070f1958213622/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-47kabq8f because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:11:54,268 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:11:55,191 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:11:55,365 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:12:42,633 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:12:42,873 - cnv_pipe.batch.run_model - INFO - Processing cluster 1092 with 160 probes
2026-06-03 06:12:43,326 - cnv_pipe.batch.run_model.cluster1092 - INFO - Child process started for cluster 1092 with 160 probes
2026-06-03 06:17:03,222 - cnv_pipe.batch.run_model.cluster1092 - INFO - Child process finished cluster 1092. Wrote cluster_1092_samples.csv and cluster_1092_params.csv
2026-06-03 06:17:03,224 - cnv_pipe.batch.run_model - INFO - Cluster 1092 finished in 260.35 seconds. Status: SUCCESS