File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/f9ea48604abac7c175ee92dbe6e207/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-xcoiahwu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:10:09,332 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:10:10,311 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:10:10,489 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:10:57,095 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:10:57,216 - cnv_pipe.batch.run_model - INFO - Processing cluster 829 with 198 probes
2026-06-03 06:10:57,913 - cnv_pipe.batch.run_model.cluster829 - INFO - Child process started for cluster 829 with 198 probes
2026-06-03 06:16:44,429 - cnv_pipe.batch.run_model.cluster829 - INFO - Child process finished cluster 829. Wrote cluster_829_samples.csv and cluster_829_params.csv
2026-06-03 06:16:44,432 - cnv_pipe.batch.run_model - INFO - Cluster 829 finished in 347.22 seconds. Status: SUCCESS