File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/64e2c7779599773748dfed4dbf8d8a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_3_33t5v because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:11:36,071 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:11:37,986 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:11:38,340 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:12:55,645 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:12:55,976 - cnv_pipe.batch.run_model - INFO - Processing cluster 1021 with 168 probes
2026-06-03 06:12:56,675 - cnv_pipe.batch.run_model.cluster1021 - INFO - Child process started for cluster 1021 with 168 probes
2026-06-03 06:19:09,960 - cnv_pipe.batch.run_model.cluster1021 - INFO - Child process finished cluster 1021. Wrote cluster_1021_samples.csv and cluster_1021_params.csv
2026-06-03 06:19:09,962 - cnv_pipe.batch.run_model - INFO - Cluster 1021 finished in 373.99 seconds. Status: SUCCESS