Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/83a6eb5a9efd76c3cc3115568a186b/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/7e7772bb479a234f36c70f2733e1ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/7e7772bb479a234f36c70f2733e1ea/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nzijmcc_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:09:43,452 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:09:44,384 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:09:44,583 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:10:30,938 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:10:31,159 - cnv_pipe.batch.run_model - INFO - Processing cluster 751 with 200 probes
2026-06-03 06:10:31,568 - cnv_pipe.batch.run_model.cluster751 - INFO - Child process started for cluster 751 with 200 probes
2026-06-03 06:15:48,001 - cnv_pipe.batch.run_model.cluster751 - INFO - Child process finished cluster 751. Wrote cluster_751_samples.csv and cluster_751_params.csv
2026-06-03 06:15:48,004 - cnv_pipe.batch.run_model - INFO - Cluster 751 finished in 316.84 seconds. Status: SUCCESS