File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9bae187f2c6883029afeb6ebdf937f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mbho88l8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:10:14,585 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:10:15,480 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:10:15,659 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:11:01,061 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:11:01,161 - cnv_pipe.batch.run_model - INFO - Processing cluster 843 with 182 probes
2026-06-03 06:11:01,590 - cnv_pipe.batch.run_model.cluster843 - INFO - Child process started for cluster 843 with 182 probes
2026-06-03 06:15:59,934 - cnv_pipe.batch.run_model.cluster843 - INFO - Child process finished cluster 843. Wrote cluster_843_samples.csv and cluster_843_params.csv
2026-06-03 06:15:59,936 - cnv_pipe.batch.run_model - INFO - Cluster 843 finished in 298.77 seconds. Status: SUCCESS