File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/9a4d63ebfc883a86fb4a4828484d18/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-30uide31 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:05:51,853 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:05:52,758 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:05:52,941 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:06:37,974 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:06:38,071 - cnv_pipe.batch.run_model - INFO - Processing cluster 80 with 195 probes
2026-06-03 06:06:38,635 - cnv_pipe.batch.run_model.cluster80 - INFO - Child process started for cluster 80 with 195 probes
2026-06-03 06:11:41,257 - cnv_pipe.batch.run_model.cluster80 - INFO - Child process finished cluster 80. Wrote cluster_80_samples.csv and cluster_80_params.csv
2026-06-03 06:11:41,260 - cnv_pipe.batch.run_model - INFO - Cluster 80 finished in 303.19 seconds. Status: SUCCESS