File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/da548f68c8d590347e31ae96d3b24d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hf0sgkzv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:09:32,294 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:09:33,181 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:09:33,361 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:10:18,775 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:10:18,878 - cnv_pipe.batch.run_model - INFO - Processing cluster 714 with 88 probes
2026-06-03 06:10:19,269 - cnv_pipe.batch.run_model.cluster714 - INFO - Child process started for cluster 714 with 88 probes
2026-06-03 06:13:07,912 - cnv_pipe.batch.run_model.cluster714 - INFO - Child process finished cluster 714. Wrote cluster_714_samples.csv and cluster_714_params.csv
2026-06-03 06:13:07,914 - cnv_pipe.batch.run_model - INFO - Cluster 714 finished in 169.04 seconds. Status: SUCCESS