Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/83a6eb5a9efd76c3cc3115568a186b/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/25b5869070f582cfcdda2a1b3e7df8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/e58a700d87c9824204cdc97d031cce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/e58a700d87c9824204cdc97d031cce/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ow0lh3l9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:08:28,300 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:08:29,217 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:08:29,402 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:09:16,064 - cnv_pipe.batch.run_model - INFO - Loaded data with 188 samples
2026-06-03 06:09:16,323 - cnv_pipe.batch.run_model - INFO - Processing cluster 547 with 157 probes
2026-06-03 06:09:16,758 - cnv_pipe.batch.run_model.cluster547 - INFO - Child process started for cluster 547 with 157 probes
2026-06-03 06:13:41,110 - cnv_pipe.batch.run_model.cluster547 - INFO - Child process finished cluster 547. Wrote cluster_547_samples.csv and cluster_547_params.csv
2026-06-03 06:13:41,114 - cnv_pipe.batch.run_model - INFO - Cluster 547 finished in 264.79 seconds. Status: SUCCESS