File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/c19b049a8b195c84235d6da38ed1ca/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vivywmba because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:57:35,421 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:57:36,195 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:57:36,361 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:58:16,860 - cnv_pipe.batch.run_model - INFO - Loaded data with 180 samples
2026-06-03 05:58:16,949 - cnv_pipe.batch.run_model - INFO - Processing cluster 1011 with 191 probes
2026-06-03 05:58:17,316 - cnv_pipe.batch.run_model.cluster1011 - INFO - Child process started for cluster 1011 with 191 probes
2026-06-03 06:02:38,869 - cnv_pipe.batch.run_model.cluster1011 - INFO - Child process finished cluster 1011. Wrote cluster_1011_samples.csv and cluster_1011_params.csv
2026-06-03 06:02:38,871 - cnv_pipe.batch.run_model - INFO - Cluster 1011 finished in 261.92 seconds. Status: SUCCESS