File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/b68a1d5abf258779ce8d050ccd2403/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-khmjw652 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:56:57,775 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:56:58,564 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:56:58,731 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:57:40,130 - cnv_pipe.batch.run_model - INFO - Loaded data with 180 samples
2026-06-03 05:57:40,221 - cnv_pipe.batch.run_model - INFO - Processing cluster 902 with 200 probes
2026-06-03 05:57:40,596 - cnv_pipe.batch.run_model.cluster902 - INFO - Child process started for cluster 902 with 200 probes
2026-06-03 06:02:19,362 - cnv_pipe.batch.run_model.cluster902 - INFO - Child process finished cluster 902. Wrote cluster_902_samples.csv and cluster_902_params.csv
2026-06-03 06:02:19,364 - cnv_pipe.batch.run_model - INFO - Cluster 902 finished in 279.14 seconds. Status: SUCCESS