File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/e456e2721a7d2a4addae0e9d162c0e/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-bnhzypme because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:57:22,632 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:57:23,406 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:57:23,580 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:58:02,700 - cnv_pipe.batch.run_model - INFO - Loaded data with 180 samples
2026-06-03 05:58:02,787 - cnv_pipe.batch.run_model - INFO - Processing cluster 989 with 179 probes
2026-06-03 05:58:03,157 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process started for cluster 989 with 179 probes
2026-06-03 06:02:12,338 - cnv_pipe.batch.run_model.cluster989 - INFO - Child process finished cluster 989. Wrote cluster_989_samples.csv and cluster_989_params.csv
2026-06-03 06:02:12,340 - cnv_pipe.batch.run_model - INFO - Cluster 989 finished in 249.55 seconds. Status: SUCCESS