Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/2b42d195b4fa19ad7dcc524e0de76f/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/2b42d195b4fa19ad7dcc524e0de76f/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/3613d56a7b5d45cd3a77e902cf7b59/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/2b42d195b4fa19ad7dcc524e0de76f/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b1b68f3887e999d6fc195c8939fb87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b1b68f3887e999d6fc195c8939fb87/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m4_i7fp4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:01:50,561 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:01:51,403 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:01:51,573 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:02:34,245 - cnv_pipe.batch.run_model - INFO - Loaded data with 178 samples
2026-06-03 06:02:34,451 - cnv_pipe.batch.run_model - INFO - Processing cluster 814 with 196 probes
2026-06-03 06:02:34,846 - cnv_pipe.batch.run_model.cluster814 - INFO - Child process started for cluster 814 with 196 probes
2026-06-03 06:07:31,346 - cnv_pipe.batch.run_model.cluster814 - INFO - Child process finished cluster 814. Wrote cluster_814_samples.csv and cluster_814_params.csv
2026-06-03 06:07:31,349 - cnv_pipe.batch.run_model - INFO - Cluster 814 finished in 296.90 seconds. Status: SUCCESS