mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-q3309giq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:02:39,486 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:02:40,392 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:02:40,572 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:03:23,583 - cnv_pipe.batch.run_model - INFO - Loaded data with 178 samples
2026-06-03 06:03:23,675 - cnv_pipe.batch.run_model - INFO - Processing cluster 999 with 163 probes
2026-06-03 06:03:24,179 - cnv_pipe.batch.run_model.cluster999 - INFO - Child process started for cluster 999 with 163 probes
2026-06-03 06:07:46,170 - cnv_pipe.batch.run_model.cluster999 - INFO - Child process finished cluster 999. Wrote cluster_999_samples.csv and cluster_999_params.csv
2026-06-03 06:07:46,172 - cnv_pipe.batch.run_model - INFO - Cluster 999 finished in 262.50 seconds. Status: SUCCESS