Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b1eebecd370dbb0892d916cf2ab665/.command.sh
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.gzi
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_panel.bed
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b1eebecd370dbb0892d916cf2ab665/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260511_LH00995_0040_A237YKMLT3__8afaba2b--20260512-084020/alignments/recalibrated/NA19119_c_0001_gDNA_0001_237YKMLT3_1/NA19119_c_0001_gDNA_0001_237YKMLT3_1.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
==> STAGING COMPLETE (7 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-pn0a2xzb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.