File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d39b579a55d07f5164755401d6c5d0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-pb4jopyl because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:08:02,252 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:08:03,113 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:08:03,291 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:08:49,740 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 06:08:49,981 - cnv_pipe.batch.run_model - INFO - Processing cluster 1035 with 112 probes
2026-06-03 06:08:50,413 - cnv_pipe.batch.run_model.cluster1035 - INFO - Child process started for cluster 1035 with 112 probes
2026-06-03 06:12:20,107 - cnv_pipe.batch.run_model.cluster1035 - INFO - Child process finished cluster 1035. Wrote cluster_1035_samples.csv and cluster_1035_params.csv
2026-06-03 06:12:20,108 - cnv_pipe.batch.run_model - INFO - Cluster 1035 finished in 210.13 seconds. Status: SUCCESS