File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/1cb324ffe074dfc20a05cbf6f64c5f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3xtqfoot because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:06:56,801 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:06:57,694 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:06:57,881 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:07:46,172 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 06:07:46,417 - cnv_pipe.batch.run_model - INFO - Processing cluster 746 with 166 probes
2026-06-03 06:07:46,854 - cnv_pipe.batch.run_model.cluster746 - INFO - Child process started for cluster 746 with 166 probes
2026-06-03 06:12:18,840 - cnv_pipe.batch.run_model.cluster746 - INFO - Child process finished cluster 746. Wrote cluster_746_samples.csv and cluster_746_params.csv
2026-06-03 06:12:18,842 - cnv_pipe.batch.run_model - INFO - Cluster 746 finished in 272.42 seconds. Status: SUCCESS