File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/3747705a3cfeb39bd587ce6ad759e0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-s6vtabt8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:07:55,139 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:07:55,979 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:07:56,148 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:08:39,985 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 06:08:40,245 - cnv_pipe.batch.run_model - INFO - Processing cluster 994 with 131 probes
2026-06-03 06:08:40,637 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process started for cluster 994 with 131 probes
2026-06-03 06:12:32,419 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process finished cluster 994. Wrote cluster_994_samples.csv and cluster_994_params.csv
2026-06-03 06:12:32,421 - cnv_pipe.batch.run_model - INFO - Cluster 994 finished in 232.18 seconds. Status: SUCCESS