.command.log - Workdir - GERMLINE_CNV:CalcPanelCoverage (NTC_0001_0001_A23WF23LT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/8d06d223c59dea44bfa286535c7643/.command.log
Size: 1.3 KB
Task: GERMLINE_CNV:CalcPanelCoverage (NTC_0001_0001_A23WF23LT4_2)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260518_LH00995_0043_A23WF23LT4__8afaba2b--20260520-053029/alignments/recalibrated/NTC_0001_0001_A23WF23LT4_2/NTC_0001_0001_A23WF23LT4_2.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/8d06d223c59dea44bfa286535c7643/.command.sh
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.gzi
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_panel.bed
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/8d06d223c59dea44bfa286535c7643/.command.run
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
==> STAGING COMPLETE (7 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-yebfys60 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.