mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rvv7o4_l because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:07:56,596 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:07:57,516 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:07:57,688 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:08:45,035 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 06:08:45,273 - cnv_pipe.batch.run_model - INFO - Processing cluster 1000 with 101 probes
2026-06-03 06:08:45,701 - cnv_pipe.batch.run_model.cluster1000 - INFO - Child process started for cluster 1000 with 101 probes
2026-06-03 06:11:46,993 - cnv_pipe.batch.run_model.cluster1000 - INFO - Child process finished cluster 1000. Wrote cluster_1000_samples.csv and cluster_1000_params.csv
2026-06-03 06:11:46,995 - cnv_pipe.batch.run_model - INFO - Cluster 1000 finished in 181.72 seconds. Status: SUCCESS