.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (1029_G7F-N1-BDNA-1_A23WF23LT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/7d71988f2f7e5b1f72164b04ca40f2/.command.sh
Size: 299 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (1029_G7F-N1-BDNA-1_A23WF23LT4_2)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    1029_G7F-N1-BDNA-1_A23WF23LT4_2 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    1029_G7F-N1-BDNA-1_A23WF23LT4_2_probe_sample.parquet