File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/feddd22a44787ce49e2f517327b779/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0dkjezgv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 06:07:00,269 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 06:07:01,146 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 06:07:01,322 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 06:07:47,096 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 06:07:47,319 - cnv_pipe.batch.run_model - INFO - Processing cluster 754 with 183 probes
2026-06-03 06:07:47,730 - cnv_pipe.batch.run_model.cluster754 - INFO - Child process started for cluster 754 with 183 probes
2026-06-03 06:12:42,457 - cnv_pipe.batch.run_model.cluster754 - INFO - Child process finished cluster 754. Wrote cluster_754_samples.csv and cluster_754_params.csv
2026-06-03 06:12:42,459 - cnv_pipe.batch.run_model - INFO - Cluster 754 finished in 295.14 seconds. Status: SUCCESS