mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-o4iqfdo_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:49,038 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:50,145 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:50,358 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:42,991 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:43,307 - cnv_pipe.batch.run_model - INFO - Processing cluster 541 with 177 probes
2026-06-03 05:43:43,825 - cnv_pipe.batch.run_model.cluster541 - INFO - Child process started for cluster 541 with 177 probes
2026-06-03 05:48:46,876 - cnv_pipe.batch.run_model.cluster541 - INFO - Child process finished cluster 541. Wrote cluster_541_samples.csv and cluster_541_params.csv
2026-06-03 05:48:46,878 - cnv_pipe.batch.run_model - INFO - Cluster 541 finished in 303.57 seconds. Status: SUCCESS