File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/599b588ff03f9c71e556c0e9ba1642/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-uo54r726 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:44:21,805 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:44:22,785 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:44:22,980 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:45:12,570 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:45:12,849 - cnv_pipe.batch.run_model - INFO - Processing cluster 819 with 198 probes
2026-06-03 05:45:13,306 - cnv_pipe.batch.run_model.cluster819 - INFO - Child process started for cluster 819 with 198 probes
2026-06-03 05:50:44,158 - cnv_pipe.batch.run_model.cluster819 - INFO - Child process finished cluster 819. Wrote cluster_819_samples.csv and cluster_819_params.csv
2026-06-03 05:50:44,161 - cnv_pipe.batch.run_model - INFO - Cluster 819 finished in 331.31 seconds. Status: SUCCESS