mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-amxmmgmn because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:41:45,200 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:41:46,209 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:41:46,409 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:42:31,283 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:42:31,541 - cnv_pipe.batch.run_model - INFO - Processing cluster 367 with 189 probes
2026-06-03 05:42:31,941 - cnv_pipe.batch.run_model.cluster367 - INFO - Child process started for cluster 367 with 189 probes
2026-06-03 05:48:07,539 - cnv_pipe.batch.run_model.cluster367 - INFO - Child process finished cluster 367. Wrote cluster_367_samples.csv and cluster_367_params.csv
2026-06-03 05:48:07,541 - cnv_pipe.batch.run_model - INFO - Cluster 367 finished in 336.00 seconds. Status: SUCCESS