mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zbwywllu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:40:17,218 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:40:18,362 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:40:18,600 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:41:12,135 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:41:12,457 - cnv_pipe.batch.run_model - INFO - Processing cluster 65 with 159 probes
2026-06-03 05:41:12,960 - cnv_pipe.batch.run_model.cluster65 - INFO - Child process started for cluster 65 with 159 probes
2026-06-03 05:46:10,324 - cnv_pipe.batch.run_model.cluster65 - INFO - Child process finished cluster 65. Wrote cluster_65_samples.csv and cluster_65_params.csv
2026-06-03 05:46:10,327 - cnv_pipe.batch.run_model - INFO - Cluster 65 finished in 297.87 seconds. Status: SUCCESS