mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gj6lb3yy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:40:11,707 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:40:12,807 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:40:13,017 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:41:06,550 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:41:06,862 - cnv_pipe.batch.run_model - INFO - Processing cluster 52 with 193 probes
2026-06-03 05:41:07,363 - cnv_pipe.batch.run_model.cluster52 - INFO - Child process started for cluster 52 with 193 probes
2026-06-03 05:46:53,490 - cnv_pipe.batch.run_model.cluster52 - INFO - Child process finished cluster 52. Wrote cluster_52_samples.csv and cluster_52_params.csv
2026-06-03 05:46:53,493 - cnv_pipe.batch.run_model - INFO - Cluster 52 finished in 346.63 seconds. Status: SUCCESS