Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d9542e46de57e27e7799363423749a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d9542e46de57e27e7799363423749a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-10zsls9j because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:38,644 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:39,603 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:39,775 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:22,847 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:23,095 - cnv_pipe.batch.run_model - INFO - Processing cluster 713 with 187 probes
2026-06-03 05:44:23,505 - cnv_pipe.batch.run_model.cluster713 - INFO - Child process started for cluster 713 with 187 probes
2026-06-03 05:49:59,440 - cnv_pipe.batch.run_model.cluster713 - INFO - Child process finished cluster 713. Wrote cluster_713_samples.csv and cluster_713_params.csv
2026-06-03 05:49:59,442 - cnv_pipe.batch.run_model - INFO - Cluster 713 finished in 336.35 seconds. Status: SUCCESS