mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vdkoxds2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:46,286 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:47,393 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:47,596 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:44,875 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:45,222 - cnv_pipe.batch.run_model - INFO - Processing cluster 535 with 199 probes
2026-06-03 05:43:45,702 - cnv_pipe.batch.run_model.cluster535 - INFO - Child process started for cluster 535 with 199 probes
2026-06-03 05:49:19,162 - cnv_pipe.batch.run_model.cluster535 - INFO - Child process finished cluster 535. Wrote cluster_535_samples.csv and cluster_535_params.csv
2026-06-03 05:49:19,165 - cnv_pipe.batch.run_model - INFO - Cluster 535 finished in 333.94 seconds. Status: SUCCESS