Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/67a67e2ad4a64dc5337b7ba276a8c8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/67a67e2ad4a64dc5337b7ba276a8c8/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gklj1zh6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:45:10,143 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:45:11,065 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:45:11,241 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:45:54,703 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:45:54,938 - cnv_pipe.batch.run_model - INFO - Processing cluster 1018 with 170 probes
2026-06-03 05:45:55,315 - cnv_pipe.batch.run_model.cluster1018 - INFO - Child process started for cluster 1018 with 170 probes
2026-06-03 05:50:56,186 - cnv_pipe.batch.run_model.cluster1018 - INFO - Child process finished cluster 1018. Wrote cluster_1018_samples.csv and cluster_1018_params.csv
2026-06-03 05:50:56,189 - cnv_pipe.batch.run_model - INFO - Cluster 1018 finished in 301.25 seconds. Status: SUCCESS