Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/67c40f057db9f5aacb4eaab9368680/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/67c40f057db9f5aacb4eaab9368680/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mp_j8zis because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:41,141 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:42,169 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:42,368 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:26,704 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:26,926 - cnv_pipe.batch.run_model - INFO - Processing cluster 722 with 189 probes
2026-06-03 05:44:27,316 - cnv_pipe.batch.run_model.cluster722 - INFO - Child process started for cluster 722 with 189 probes
2026-06-03 05:50:07,387 - cnv_pipe.batch.run_model.cluster722 - INFO - Child process finished cluster 722. Wrote cluster_722_samples.csv and cluster_722_params.csv
2026-06-03 05:50:07,390 - cnv_pipe.batch.run_model - INFO - Cluster 722 finished in 340.46 seconds. Status: SUCCESS