mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ldko1733 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:31,876 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:32,999 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:33,203 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:25,709 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:25,956 - cnv_pipe.batch.run_model - INFO - Processing cluster 691 with 145 probes
2026-06-03 05:44:26,382 - cnv_pipe.batch.run_model.cluster691 - INFO - Child process started for cluster 691 with 145 probes
2026-06-03 05:48:52,147 - cnv_pipe.batch.run_model.cluster691 - INFO - Child process finished cluster 691. Wrote cluster_691_samples.csv and cluster_691_params.csv
2026-06-03 05:48:52,148 - cnv_pipe.batch.run_model - INFO - Cluster 691 finished in 266.19 seconds. Status: SUCCESS