mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ynhczok3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:25,348 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:26,371 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:26,565 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:18,593 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:18,951 - cnv_pipe.batch.run_model - INFO - Processing cluster 478 with 199 probes
2026-06-03 05:43:19,455 - cnv_pipe.batch.run_model.cluster478 - INFO - Child process started for cluster 478 with 199 probes
2026-06-03 05:48:48,287 - cnv_pipe.batch.run_model.cluster478 - INFO - Child process finished cluster 478. Wrote cluster_478_samples.csv and cluster_478_params.csv
2026-06-03 05:48:48,290 - cnv_pipe.batch.run_model - INFO - Cluster 478 finished in 329.34 seconds. Status: SUCCESS