mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vpp67ysh because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:02,298 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:03,475 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:03,701 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:42:59,409 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:42:59,696 - cnv_pipe.batch.run_model - INFO - Processing cluster 416 with 187 probes
2026-06-03 05:43:00,364 - cnv_pipe.batch.run_model.cluster416 - INFO - Child process started for cluster 416 with 187 probes
2026-06-03 05:48:32,790 - cnv_pipe.batch.run_model.cluster416 - INFO - Child process finished cluster 416. Wrote cluster_416_samples.csv and cluster_416_params.csv
2026-06-03 05:48:32,792 - cnv_pipe.batch.run_model - INFO - Cluster 416 finished in 333.10 seconds. Status: SUCCESS