mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-afpc48no because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:10,619 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:11,553 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:11,751 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:02,155 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:02,483 - cnv_pipe.batch.run_model - INFO - Processing cluster 609 with 185 probes
2026-06-03 05:44:02,962 - cnv_pipe.batch.run_model.cluster609 - INFO - Child process started for cluster 609 with 185 probes
2026-06-03 05:49:23,435 - cnv_pipe.batch.run_model.cluster609 - INFO - Child process finished cluster 609. Wrote cluster_609_samples.csv and cluster_609_params.csv
2026-06-03 05:49:23,437 - cnv_pipe.batch.run_model - INFO - Cluster 609 finished in 320.95 seconds. Status: SUCCESS