mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-7cewaluf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:44,369 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:46,322 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:46,754 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:12,410 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:12,637 - cnv_pipe.batch.run_model - INFO - Processing cluster 513 with 159 probes
2026-06-03 05:44:13,728 - cnv_pipe.batch.run_model.cluster513 - INFO - Child process started for cluster 513 with 159 probes
2026-06-03 05:51:00,943 - cnv_pipe.batch.run_model.cluster513 - INFO - Child process finished cluster 513. Wrote cluster_513_samples.csv and cluster_513_params.csv
2026-06-03 05:51:00,945 - cnv_pipe.batch.run_model - INFO - Cluster 513 finished in 408.31 seconds. Status: SUCCESS