Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e8ffe1ae0a98a4fffd739c93ecf658/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e8ffe1ae0a98a4fffd739c93ecf658/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1xwd2plj because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:29,629 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:30,809 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:31,020 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:24,099 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:24,234 - cnv_pipe.batch.run_model - INFO - Processing cluster 492 with 192 probes
2026-06-03 05:43:24,767 - cnv_pipe.batch.run_model.cluster492 - INFO - Child process started for cluster 492 with 192 probes
2026-06-03 05:48:46,904 - cnv_pipe.batch.run_model.cluster492 - INFO - Child process finished cluster 492. Wrote cluster_492_samples.csv and cluster_492_params.csv
2026-06-03 05:48:46,906 - cnv_pipe.batch.run_model - INFO - Cluster 492 finished in 322.67 seconds. Status: SUCCESS